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    GXM3 glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837488, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GXM3
    Official Full Name
    glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
    Primary source
    TAIR:AT1G09610
    Locus tag
    AT1G09610
    See related
    Araport:AT1G09610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14J9.29; F14J9_29; glucuronoxylan methyltransferase 3
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    Genomic context

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    See GXM3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (3111694..3112873)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Translation protein SH3-like family protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase Neighboring gene uncharacterized protein Neighboring gene RAB GTPase 11C Neighboring gene Translation elongation factor EF1B, gamma chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Modification of the degree of 4-O-methylation of secondary wall glucuronoxylan. Yuan Y, et al. Plant Sci, 2014 Apr. PMID 24576763
    2. Three Arabidopsis DUF579 domain-containing GXM proteins are methyltransferases catalyzing 4-o-methylation of glucuronic acid on xylan. Lee C, et al. Plant Cell Physiol, 2012 Nov. PMID 23045523
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_100833.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucuronoxylan 4-O-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in xylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within xylan metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
    NP_172432.1
    • Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3111694..3112873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100833.2 → NP_172432.1  glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172432.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80540, Q6NMK1
      UniProtKB/TrEMBL
      A0A178W7U8, A0A5S9THU7
      Conserved Domains (1) summary
      cl04661
      Location:55 → 281
      Polysacc_synt_4; Polysaccharide biosynthesis
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NMK1.1

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