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    OCT2 organic cation/carnitine transporter 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844274, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OCT2
    Official Full Name
    organic cation/carnitine transporter 2
    Primary source
    TAIR:AT1G79360
    Locus tag
    AT1G79360
    See related
    Araport:AT1G79360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATOCT2; ORGANIC CATION TRANSPORTER 2; organic cation/carnitine transporter 2; YUP8H12R.2; YUP8H12R_2
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    Genomic context

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    See OCT2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (29853960..29855872, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene metacaspase 5 Neighboring gene metacaspase 4 Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene cytochrome P450, family 79, subfamily C, polypeptide 1 Neighboring gene Ca(2)-dependent phospholipid-binding protein (Copine) family Neighboring gene centrosomal protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Stress regulated members of the plant organic cation transporter family are localized to the vacuolar membrane. Küfner I, et al. BMC Res Notes, 2008 Jul 11. PMID 18710496, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106584.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    organic cation/carnitine transporter 2
    NP_178054.1
    • organic cation/carnitine transporter 2 (2-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, ion transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Organic cation transport protein (InterPro:IPR004749), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 3 (TAIR:AT1G16390.1); Has 24066 Blast hits to 23860 proteins in 1933 species: Archae - 496; Bacteria - 11644; Metazoa - 4565; Fungi - 4772; Plants - 1707; Viruses - 0; Other Eukaryotes - 882 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29853960..29855872 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106584.3 → NP_178054.1  organic cation/carnitine transporter 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178054.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64515
      UniProtKB/TrEMBL
      A0A178WL28, A0A5S9WVR0, A0A654EQJ8
      Conserved Domains (1) summary
      cd17378
      Location:79 → 497
      MFS_OCT_plant; Plant organic cation/carnitine transporters of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64515.1

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