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    D27 beta-carotene isomerase D27-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838334, updated on 18-Sep-2024

    Summary

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    Official Symbol
    D27
    Official Full Name
    beta-carotene isomerase D27-like protein
    Primary source
    TAIR:AT1G03055
    Locus tag
    AT1G03055
    See related
    Araport:AT1G03055
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    A. thaliana homolog of rice D27; AtD27; DWARF27
    Summary
    Encodes the ortholog of rice D27. It is plastid-localized and is required for the inhibition of secondary bud outgrowth and operates on a nonmobile precursor upstream of MAX1 in the SL biosynthesis pathway.
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    Genomic context

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    See D27 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (710018..711857, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Thioredoxin superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene BEACH-DOMAIN HOMOLOG A1 Neighboring gene Bax inhibitor-1 family protein Neighboring gene kinase interacting (KIP1-like) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis D27-LIKE1 is a cis/cis/trans-β-carotene isomerase that contributes to Strigolactone biosynthesis and negatively impacts ABA level. Yang Y, et al. Plant J, 2023 Mar. PMID 36602437
    2. The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones. Waters MT, et al. Plant Physiol, 2012 Jul. PMID 22623516, Free PMC Article
    3. DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth. Lin H, et al. Plant Cell, 2009 May. PMID 19470589, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Arabidopsis D27-LIKE1 is a cis/cis/trans-beta-carotene isomerase that contributes to Strigolactone biosynthesis and negatively impacts ABA level.
      Title: The Arabidopsis D27-LIKE1 is a cis/cis/trans-β-carotene isomerase that contributes to Strigolactone biosynthesis and negatively impacts ABA level.
    2. AtD27 operates on a nonmobile precursor upstream of MAX1 in the strigolactone biosynthesis pathway. [AtD27]
      Title: The Arabidopsis ortholog of rice DWARF27 acts upstream of MAX1 in the control of plant development by strigolactones.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    NM_100187.3
    NM_202019.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-carotene isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within secondary shoot formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within strigolactone biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-carotene isomerase D27-like protein
    NP_563673.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    NP_973748.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      710018..711857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100187.3 → NP_563673.1  beta-carotene isomerase D27-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563673.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7XA78
      UniProtKB/TrEMBL
      A0A178WL30, A0A5S9SB86, A0A654E7K8
      Conserved Domains (1) summary
      pfam13225
      Location:160 → 242
      DUF4033; Domain of unknown function (DUF4033)

    2. NM_202019.2 → NP_973748.1  beta-carotene isomerase D27-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973748.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJH9, F4HZB1
      Conserved Domains (1) summary
      pfam13225
      Location:160 → 187
      DUF4033; Domain of unknown function (DUF4033)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XA78.1

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