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    Transcriptional factor B3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816118, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcriptional factor B3 family protein
    Primary source
    TAIR:AT2G16210
    Locus tag
    AT2G16210
    See related
    Araport:AT2G16210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H1.23; F7H1_23; REM24; reproductive meristem 24
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (7026761..7029175, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene structural molecule Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene EMBRYO SURROUNDING FACTOR-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_127178.3
    NM_201742.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcriptional factor B3 family protein
    NP_179217.2
    • Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G35310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973471.1
    • Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT5G09780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7026761..7029175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127178.3 → NP_179217.2  Transcriptional factor B3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179217.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5BPT7, Q84RE7, Q84RE8, Q9XIG9
      UniProtKB/TrEMBL
      A0A178VWE0, A0A5S9WYD0
      Conserved Domains (1) summary
      smart01019
      Location:19 → 112
      B3; B3 DNA binding domain

    2. NM_201742.1 → NP_973471.1  Transcriptional factor B3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973471.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5BPT7
      Conserved Domains (1) summary
      smart01019
      Location:19 → 112
      B3; B3 DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BPT7.1

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