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    structural molecule [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816117, updated on 18-Sep-2024

    Summary

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    Official Full Name
    structural molecule
    Primary source
    TAIR:AT2G16200
    Locus tag
    AT2G16200
    See related
    Araport:AT2G16200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H1.22; F7H1_22
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (7024607..7025231)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Transcriptional factor B3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    structural molecule
    NP_001189534.1
    • structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, Golgi-associated vesicle; CONTAINS InterPro DOMAIN/s: Coatomer, gamma subunit, appendage (InterPro:IPR014863), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028); BEST Arabidopsis thaliana protein match is: coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (TAIR:AT4G34450.1).
    NP_179216.1
    • structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, Golgi-associated vesicle; CONTAINS InterPro DOMAIN/s: Coatomer, gamma subunit, appendage (InterPro:IPR014863), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873); BEST Arabidopsis thaliana protein match is: coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative (TAIR:AT4G34450.1); Has 75 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7024607..7025231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202605.1 → NP_001189534.1  structural molecule [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189534.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IKA7
      Conserved Domains (1) summary
      pfam16381
      Location:20 → 80
      Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform

    2. NM_127177.1 → NP_179216.1  structural molecule [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179216.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNZ9, A0A5S9WYD6, Q9XIH0
      Conserved Domains (1) summary
      pfam16381
      Location:1 → 66
      Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform
    Nucleotide Protein
    Heading Accession and Version

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