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    OCT5 organic cation/carnitine transporter5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844279, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OCT5
    Official Full Name
    organic cation/carnitine transporter5
    Primary source
    TAIR:AT1G79410
    Locus tag
    AT1G79410
    See related
    Araport:AT1G79410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtOCT5; organic cation/carnitine transporter5; T8K14.17; T8K14_17
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    Genomic context

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    See OCT5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (29867854..29869784, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ca(2)-dependent phospholipid-binding protein (Copine) family Neighboring gene centrosomal protein Neighboring gene cation/H+ exchanger 2 Neighboring gene C-type mannose receptor (DUF620) Neighboring gene Homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Stress regulated members of the plant organic cation transporter family are localized to the vacuolar membrane. Küfner I, et al. BMC Res Notes, 2008 Jul 11. PMID 18710496, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_106589.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    organic cation/carnitine transporter5
    NP_178059.1
    • organic cation/carnitine transporter5 (5-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 6 (TAIR:AT1G16370.1); Has 11548 Blast hits to 11506 proteins in 1434 species: Archae - 261; Bacteria - 5062; Metazoa - 3508; Fungi - 1334; Plants - 912; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29867854..29869784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106589.3 → NP_178059.1  organic cation/carnitine transporter5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178059.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7V4, Q9SAK7
      UniProtKB/TrEMBL
      A0A654EQD3, A0A7G2E705
      Conserved Domains (1) summary
      cd17378
      Location:83 → 488
      MFS_OCT_plant; Plant organic cation/carnitine transporters of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SAK7.1

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