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    forkhead-associated domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837162, updated on 18-Sep-2024

    Summary

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    Official Full Name
    forkhead-associated domain protein
    Primary source
    TAIR:AT1G06510
    Locus tag
    AT1G06510
    See related
    Araport:AT1G06510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12K11.16; F12K11_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (1992229..1993841)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF3317) Neighboring gene ncRNA Neighboring gene glycerol-3-phosphate acyltransferase 1 Neighboring gene uncharacterized protein Neighboring gene Tropomyosin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mining the soluble chloroplast proteome by affinity chromatography. Bayer RG, et al. Proteomics, 2011 Apr. PMID 21365755, Free PMC Article
    2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100530.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    forkhead-associated domain protein
    NP_172138.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1992229..1993841
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100530.5 → NP_172138.2  forkhead-associated domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172138.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W400, A0A5S9SZG9, A0A654E7L6, Q84K72
      Conserved Domains (1) summary
      COG4372
      Location:12 → 128
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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