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    ATP-dependent caseinolytic (Clp) protease/crotonase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837166, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    Primary source
    TAIR:AT1G06550
    Locus tag
    AT1G06550
    See related
    Araport:AT1G06550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12K11.12; F12K11_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (2003627..2007212, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate acyltransferase 1 Neighboring gene uncharacterized protein Neighboring gene Tropomyosin-like protein Neighboring gene NOL1/NOP2/sun family protein Neighboring gene ncRNA Neighboring gene 4-hydroxyphenylpyruvate dioxygenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_100534.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3-hydroxyisobutyryl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    NP_172142.2
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: response to karrikin, fatty acid beta-oxidation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 26566 Blast hits to 26556 proteins in 2155 species: Archae - 406; Bacteria - 18031; Metazoa - 1157; Fungi - 686; Plants - 463; Viruses - 0; Other Eukaryotes - 5823 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2003627..2007212 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100534.4 → NP_172142.2  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172142.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XU5, Q9SHJ8
      UniProtKB/TrEMBL
      A0A5S9SY24, A0A654EI12
      Conserved Domains (1) summary
      PLN02874
      Location:1 → 380
      PLN02874; 3-hydroxyisobutyryl-CoA hydrolase-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SHJ8.2

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