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    RPL21C Ribosomal protein L21 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840472, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPL21C
    Official Full Name
    Ribosomal protein L21
    Primary source
    TAIR:AT1G35680
    Locus tag
    AT1G35680
    See related
    Araport:AT1G35680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    chloroplast ribosomal protein L21; F15O4.7
    Summary
    Encodes a chloroplast ribosomal protein L21 that is required for chloroplast development and embryogenesis.
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    Genomic context

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    See RPL21C in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (13208683..13210428)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene calcium-dependent protein kinase 2 Neighboring gene pseudo Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The chloroplast ribosomal protein L21 gene is essential for plastid development and embryogenesis in Arabidopsis. Yin T, et al. Planta, 2012 May. PMID 22105802
    2. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    3. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    4. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701
    5. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Chloroplast ribosomal protein L21 gene is required for chloroplast development and embryogenesis in Arabidopsis.[RPL21C]
      Title: The chloroplast ribosomal protein L21 gene is essential for plastid development and embryogenesis in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103272.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within thylakoid membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L21
    NP_174808.1
    • Ribosomal protein L21; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cold, translation; LOCATED IN: ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L21, conserved site (InterPro:IPR018258), Ribosomal protein L21 (InterPro:IPR001787); BEST Arabidopsis thaliana protein match is: Ribosomal protein L21 (TAIR:AT4G30930.1); Has 7103 Blast hits to 7101 proteins in 2544 species: Archae - 0; Bacteria - 5138; Metazoa - 96; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 1731 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      13208683..13210428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103272.4 → NP_174808.1  Ribosomal protein L21 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174808.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P51412, Q9SMM2
      UniProtKB/TrEMBL
      A0A178WJ77, A0A5S9WIZ3
      Conserved Domains (1) summary
      pfam00829
      Location:101 → 201
      Ribosomal_L21p; Ribosomal prokaryotic L21 protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P51412.1

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