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    MORF9 plastid developmental protein DAG [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837685, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MORF9
    Official Full Name
    plastid developmental protein DAG
    Primary source
    TAIR:AT1G11430
    Locus tag
    AT1G11430
    See related
    Araport:AT1G11430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    multiple organellar RNA editing factor 9; T23J18.10; T23J18_10
    Summary
    Encodes a protein involved in RNA editing in chloroplasts.
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    Genomic context

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    See MORF9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3847220..3849224)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene partner of Y14-MAGO Neighboring gene ncRNA Neighboring gene S-locus lectin protein kinase family protein Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) Neighboring gene uncharacterized protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MORF9-dependent specific plastid RNA editing inhibits root growth under sugar starvation in Arabidopsis. Xie Y, et al. Plant Cell Environ, 2024 Jun. PMID 38357785
    2. MORF9 Functions in Plastid RNA Editing with Tissue Specificity. Tian F, et al. Int J Mol Sci, 2019 Sep 19. PMID 31546885, Free PMC Article
    3. The Pentratricopeptide Repeat Protein Pigment-Defective Mutant2 is Involved in the Regulation of Chloroplast Development and Chloroplast Gene Expression in Arabidopsis. Du L, et al. Plant Cell Physiol, 2017 Apr 1. PMID 28158776
    4. Crystal structures of the Arabidopsis thaliana organellar RNA editing factors MORF1 and MORF9. Haag S, et al. Nucleic Acids Res, 2017 May 5. PMID 28201607, Free PMC Article
    5. MORF9 increases the RNA-binding activity of PLS-type pentatricopeptide repeat protein in plastid RNA editing. Yan J, et al. Nat Plants, 2017 Apr 10. PMID 28394309

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MORF9-dependent specific plastid RNA editing inhibits root growth under sugar starvation in Arabidopsis.
      Title: MORF9-dependent specific plastid RNA editing inhibits root growth under sugar starvation in Arabidopsis.
    2. MORF9-mediated RNA editing is tissue-dependent and the resultant organelle proteomes are pertinent to the specific tissue functions.
      Title: MORF9 Functions in Plastid RNA Editing with Tissue Specificity.
    3. MORF2-MORF9 heterodimer is a core member of editosomes in Arabidopsis chloroplasts.
      Title: MORF2 tightly associates with MORF9 to regulate chloroplast RNA editing in Arabidopsis.
    4. MORF9 binding induces significant compressed conformational changes of (PLS)3PPR, revealing the molecular mechanisms by which MORF9-bound (PLS)3PPR has increased RNA-binding activity. 406-17
      Title: MORF9 increases the RNA-binding activity of PLS-type pentatricopeptide repeat protein in plastid RNA editing.
    5. With the MORF1 and MORF9 structures we elucidate a yet unknown fold, corroborate MORF interaction studies, validate the mechanism of MORF multimerization by structure-based mutants and pave the way towards a complete structural characterization of the plant RNA editosome.
      Title: Crystal structures of the Arabidopsis thaliana organellar RNA editing factors MORF1 and MORF9.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101016.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein dimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast RNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    colocalizes_with chloroplast IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 

    General protein information

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    Preferred Names
    plastid developmental protein DAG
    NP_172610.1
    • plastid developmental protein DAG, putative; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT3G06790.2); Has 252 Blast hits to 229 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3847220..3849224
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101016.4 → NP_172610.1  plastid developmental protein DAG [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172610.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LB30, Q9LPZ1
      UniProtKB/TrEMBL
      A0A178WH59, A0A5S9TUT7, A0A654EAW1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LPZ1.1

    Gene LinkOut

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