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    AMY2 alpha-amylase-like 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843945, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AMY2
    Official Full Name
    alpha-amylase-like 2
    Primary source
    TAIR:AT1G76130
    Locus tag
    AT1G76130
    See related
    Araport:AT1G76130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    alpha-amylase-like 2; ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2; ATAMY2; T23E18.6; T23E18_6
    Summary
    alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.
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    Genomic context

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    See AMY2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (28560629..28564159)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein Neighboring gene Pseudouridine synthase family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. alpha-Amylase is not required for breakdown of transitory starch in Arabidopsis leaves. Yu TS, et al. J Biol Chem, 2005 Mar 18. PMID 15637061
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106262.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alpha-amylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-amylase-like 2
    NP_177740.1
    • alpha-amylase-like 2 (AMY2); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity, calcium ion binding; INVOLVED IN: carbohydrate metabolic process, glycogen catabolic process; LOCATED IN: extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 13 (InterPro:IPR006046), Alpha-amylase, plant (InterPro:IPR013775), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047), Alpha-amylase, C-terminal beta-sheet (InterPro:IPR012850); BEST Arabidopsis thaliana protein match is: alpha-amylase-like 3 (TAIR:AT1G69830.1); Has 2455 Blast hits to 2450 proteins in 882 species: Archae - 39; Bacteria - 1348; Metazoa - 171; Fungi - 337; Plants - 494; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28560629..28564159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334710.1 → NP_001323338.1  alpha-amylase-like 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFG1, Q9SGS0
      UniProtKB/TrEMBL
      A0A178W2W8, A0A5S9WUR3
      Conserved Domains (1) summary
      PLN02361
      Location:15 → 413
      PLN02361; alpha-amylase

    2. NM_106262.4 → NP_177740.1  alpha-amylase-like 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177740.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFG1, Q9SGS0
      UniProtKB/TrEMBL
      A0A178W2W8, A0A5S9WUR3
      Conserved Domains (1) summary
      PLN02361
      Location:15 → 413
      PLN02361; alpha-amylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LFG1.1

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