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    BGAL5 beta-galactosidase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841080, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BGAL5
    Official Full Name
    beta-galactosidase 5
    Primary source
    TAIR:AT1G45130
    Locus tag
    AT1G45130
    See related
    Araport:AT1G45130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtBGAL5; beta-galactosidase 5; F27F5.20; F27F5_20
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    Genomic context

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    See BGAL5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Sequence:
    Chromosome: 1; NC_003070.9 (17065111..17069269)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetrapyrrole (Corrin/Porphyrin) Methylase Neighboring gene pseudo Neighboring gene pseudo Neighboring gene thioredoxin H-type 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis At1g45130 and At3g52840 genes encode beta-galactosidases with activity toward cell wall polysaccharides. Gantulga D, et al. Phytochemistry, 2008 May. PMID 18359051
    2. Subcellular location of Arabidopsis thaliana subfamily a1 β-galactosidases and developmental regulation of transcript levels of their coding genes. Moneo-Sánchez M, et al. Plant Physiol Biochem, 2016 Dec. PMID 27676245
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Studies indicate the transcript accumulation of the beta-galactosidases (BGAL) genes AtBGAL1 (At3g13750), AtBGAL2 (At3g52840), AtBGAL3 (At4g36360), AtBGAL4 (At5g56870), AtBGAL5 (At1g45130) and AtBGAL12 (At4g26140) along the plant development, as well as their subcellular location by the construction of transgenic plants producing the enhanced green fluorescent protein (eGFP) fused to the six BGAL proteins.
      Title: Subcellular location of Arabidopsis thaliana subfamily a1 β-galactosidases and developmental regulation of transcript levels of their coding genes.
    2. It is shown by dot-immunoblotting that At1g45130 is the gene expressing Gal-5 which is associated with the cell wall in Arabidopsis.
      Title: The Arabidopsis At1g45130 and At3g52840 genes encode beta-galactosidases with activity toward cell wall polysaccharides.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001333243.1
    NM_103587.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-galactosidase 5
    NP_175127.1
    • beta-galactosidase 5 (BGAL5); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 3 (TAIR:AT4G36360.1); Has 2206 Blast hits to 2062 proteins in 469 species: Archae - 15; Bacteria - 946; Metazoa - 364; Fungi - 218; Plants - 593; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17065111..17069269
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103587.3 → NP_175127.1  beta-galactosidase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175127.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93Z63, Q9MAJ7, Q9SCV7
      UniProtKB/TrEMBL
      A0A178WBB9, A0A5S9WMI2, A0A7G2DZ25
      Conserved Domains (2) summary
      pfam01301
      Location:37 → 340
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam13364
      Location:472 → 552
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    2. NM_001333243.1 → NP_001320473.1  beta-galactosidase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AMY9, A0A5S9WMI2, A0A7G2DZ25
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9MAJ7.1

    Gene LinkOut

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