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    GATL5 galacturonosyltransferase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839475, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GATL5
    Official Full Name
    galacturonosyltransferase 5
    Primary source
    TAIR:AT1G02720
    Locus tag
    AT1G02720
    See related
    Araport:AT1G02720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGATL5; galacturonosyltransferase 5; galacturonosyltransferase-like 5; T14P4.1; T14P4_1
    Summary
    Encodes a protein with putative galacturonosyltransferase activity.
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    Genomic context

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    See GATL5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (591682..594264)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GATA transcription factor-like protein Neighboring gene uncharacterized protein Neighboring gene glycine-rich protein Neighboring gene cellulose synthase-like D5 Neighboring gene MRG family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GALACTURONOSYLTRANSFERASE-LIKE5 is involved in the production of Arabidopsis seed coat mucilage. Kong Y, et al. Plant Physiol, 2013 Nov. PMID 24092888, Free PMC Article
    2. The plant glycosyltransferase clone collection for functional genomics. Lao J, et al. Plant J, 2014 Aug. PMID 24905498
    3. Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. Sterling JD, et al. Proc Natl Acad Sci U S A, 2006 Mar 28. PMID 16540543, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100152.3
    NM_202015.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mucilage biosynthetic process involved in seed coat development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within mucilage pectin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pectin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galacturonosyltransferase 5
    NP_171772.1
    • galacturonosyltransferase 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3); Has 2014 Blast hits to 2000 proteins in 469 species: Archae - 0; Bacteria - 946; Metazoa - 269; Fungi - 2; Plants - 729; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    NP_973744.1
    • galacturonosyltransferase 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      591682..594264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100152.3 → NP_171772.1  galacturonosyltransferase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171772.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FWY9
      UniProtKB/TrEMBL
      A0A7G2DRD8, W8Q7E9
      Conserved Domains (1) summary
      pfam01501
      Location:82 → 340
      Glyco_transf_8; Glycosyl transferase family 8

    2. NM_202015.2 → NP_973744.1  galacturonosyltransferase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973744.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FWY9
      UniProtKB/TrEMBL
      A0A7G2DRD8, W8Q7E9
      Conserved Domains (1) summary
      pfam01501
      Location:82 → 340
      Glyco_transf_8; Glycosyl transferase family 8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FWY9.1

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