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    RING/FYVE/PHD zinc finger superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840971, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/FYVE/PHD zinc finger superfamily protein
    Primary source
    TAIR:AT1G43770
    Locus tag
    AT1G43770
    See related
    Araport:AT1G43770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28H19.3; F28H19_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (16548417..16551909)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Li Z, et al. bioRxiv, 2023 Jan 10. PMID 36711532, Free PMC Article
    2. The SUMO E3 Ligase-Like Proteins PIAL1 and PIAL2 Interact with MOM1 and Form a Novel Complex Required for Transcriptional Silencing. Han YF, et al. Plant Cell, 2016 May. PMID 27113777, Free PMC Article
    3. A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis. Qian F, et al. J Integr Plant Biol, 2021 Apr. PMID 33433058
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001123960.2
    NM_001333220.1
    NM_103505.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone reader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/FYVE/PHD zinc finger superfamily protein
    NP_001117432.1
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G16680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_175045.2
    • RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G02890.1); Has 457 Blast hits to 390 proteins in 97 species: Archae - 0; Bacteria - 8; Metazoa - 145; Fungi - 60; Plants - 182; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16548417..16551909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001123960.2 → NP_001117432.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117432.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H578, Q9MAS0
      UniProtKB/TrEMBL
      A0A5S9WJM6, A0A654EH70
      Conserved Domains (1) summary
      smart00249
      Location:9 → 56
      PHD; PHD zinc finger

    2. NM_001333220.1 → NP_001320439.1  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H578, Q9MAS0
      UniProtKB/TrEMBL
      A0A5S9WJM6, A0A654EH70

    3. NM_103505.4 → NP_175045.2  RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175045.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WJM6, B6EUC7
      Conserved Domains (1) summary
      smart00249
      Location:9 → 56
      PHD; PHD zinc finger
    Nucleotide Protein
    Heading Accession and Version

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