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    RanBPM SPla/RYanodine receptor (SPRY) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840440, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RanBPM
    Official Full Name
    SPla/RYanodine receptor (SPRY) domain-containing protein
    Primary source
    TAIR:AT1G35470
    Locus tag
    AT1G35470
    See related
    Araport:AT1G35470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12A4.1; F12A4_1; Ran-binding protein in the microtubule-organizing centre
    Summary
    Encodes a homologue of human RanBPM that belongs to the uncharacterized family of plant SPRY, LisH, CTLH and CRA domain-containing proteins.
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    Genomic context

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    See RanBPM in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (13051157..13055093, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RALF-like 5 Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene bZIP family transcription factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactions of an Arabidopsis RanBPM homologue with LisH-CTLH domain proteins revealed high conservation of CTLH complexes in eukaryotes. Tomaštíková E, et al. BMC Plant Biol, 2012 Jun 7. PMID 22676313, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_103241.3
    NM_202234.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SPla/RYanodine receptor (SPRY) domain-containing protein
    NP_174777.2
    • SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09340.1); Has 1199 Blast hits to 1140 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 508; Fungi - 329; Plants - 180; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
    NP_973963.1
    • SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), SPla/RYanodine receptor SPRY (InterPro:IPR003877), Ran binding protein, CRA domain (InterPro:IPR019589), SPla/RYanodine receptor subgroup (InterPro:IPR018355), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      13051157..13055093 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202234.3 → NP_973963.1  SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973963.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HYD7, Q8VYQ8, Q9C8P9
      UniProtKB/TrEMBL
      A0A178WMC3, A0A5S9WLZ9, A0A654ER54
      Conserved Domains (3) summary
      smart00668
      Location:296 → 353
      CTLH; C-terminal to LisH motif
      smart00757
      Location:349 → 452
      CRA; CT11-RanBPM
      cd12885
      Location:85 → 215
      SPRY_RanBP_like; SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3

    2. NM_103241.3 → NP_174777.2  SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174777.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ER54
      Conserved Domains (4) summary
      smart00668
      Location:296 → 351
      CTLH; C-terminal to LisH motif
      smart00757
      Location:347 → 450
      CRA; CT11-RanBPM
      pfam10607
      Location:297 → 412
      CLTH; CTLH/CRA C-terminal to LisH motif domain
      cd12885
      Location:85 → 215
      SPRY_RanBP_like; SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HYD7.1

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