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    GPI transamidase component PIG-S-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819905, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GPI transamidase component PIG-S-like protein
    Primary source
    TAIR:AT3G07180
    Locus tag
    AT3G07180
    See related
    Araport:AT3G07180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (2282233..2285549, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glucan synthase-like 10 Neighboring gene Sterile alpha motif (SAM) domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Lys Neighboring gene B-cell receptor-associated protein 31-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtPIG-S, a predicted Glycosylphosphatidylinositol Transamidase subunit, is critical for pollen tube growth in Arabidopsis. Desnoyer N, et al. BMC Plant Biol, 2020 Aug 18. PMID 32811442, Free PMC Article
    2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtPIG-S, a predicted Glycosylphosphatidylinositol Transamidase subunit, is critical for pollen tube growth in Arabidopsis.
      Title: AtPIG-S, a predicted Glycosylphosphatidylinositol Transamidase subunit, is critical for pollen tube growth in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001202905.1
    NM_202516.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in attachment of GPI anchor to protein IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    GPI transamidase component PIG-S-like protein
    NP_001189834.1
    • GPI transamidase component PIG-S-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-glycan biosynthesis class S protein (InterPro:IPR019540).
    NP_187374.2
    • GPI transamidase component PIG-S-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-glycan biosynthesis class S protein (InterPro:IPR019540); Has 305 Blast hits to 301 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 122; Plants - 46; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    NP_974245.1
    • GPI transamidase component PIG-S-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-glycan biosynthesis class S protein (InterPro:IPR019540); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2282233..2285549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111598.5 → NP_187374.2  GPI transamidase component PIG-S-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187374.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EIT3, Q8W4D7
      Conserved Domains (1) summary
      pfam10510
      Location:35 → 585
      PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein

    2. NM_202516.2 → NP_974245.1  GPI transamidase component PIG-S-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JDA6
      Conserved Domains (1) summary
      pfam10510
      Location:35 → 440
      PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein

    3. NM_001202905.1 → NP_001189834.1  GPI transamidase component PIG-S-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189834.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EIT3, F4JDA5
      Conserved Domains (1) summary
      pfam10510
      Location:35 → 577
      PIG-S; Phosphatidylinositol-glycan biosynthesis class S protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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