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    HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820122, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HCF152
    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT3G09650
    Locus tag
    AT3G09650
    See related
    Araport:AT3G09650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CRM3; HIGH CHLOROPHYLL FLUORESCENCE 152
    Summary
    RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.
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    Genomic context

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    See HCF152 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (2958676..2961299)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L4/L1 family Neighboring gene ascorbate peroxidase 2 Neighboring gene minichromosome maintenance 8 Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene Ribosomal protein S12/S23 family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein. Kobayashi K, et al. Nucleic Acids Res, 2012 Mar. PMID 22127869, Free PMC Article
    2. HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs. Meierhoff K, et al. Plant Cell, 2003 Jun. PMID 12782738, Free PMC Article
    3. RNA-binding properties of HCF152, an Arabidopsis PPR protein involved in the processing of chloroplast RNA. Nakamura T, et al. Eur J Biochem, 2003 Oct. PMID 14519118
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The results identified amino acids of HCF152 that are putatively involved in affinity for RNA and in recognizing specific nucleobases.
      Title: Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111799.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_187576.1
    • HIGH CHLOROPHYLL FLUORESCENCE 152 (HCF152); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G03100.1); Has 43769 Blast hits to 13527 proteins in 285 species: Archae - 3; Bacteria - 26; Metazoa - 343; Fungi - 654; Plants - 41314; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2958676..2961299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111799.4 → NP_187576.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187576.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XQ4, Q9SF38
      UniProtKB/TrEMBL
      A0A178V9F2, A0A5S9XB61
      Conserved Domains (4) summary
      PLN03218
      Location:401 → 721
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:489 → 516
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:257 → 318
      PPR_3; Pentatricopeptide repeat domain
      pfam13041
      Location:234 → 283
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SF38.1

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