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    EMB2768 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821282, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB2768
    Official Full Name
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
    Primary source
    TAIR:AT3G02660
    Locus tag
    AT3G02660
    See related
    Araport:AT3G02660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 2768; EMBRYONIC FACTOR 31; F16B3.29; F16B3_29; FAC31
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    Genomic context

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    See EMB2768 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (570134..572386, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Glycine-rich protein family Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EMBRYONIC FACTOR 31 encodes a tyrosyl-tRNA synthetase that is essential for seed development. Jiang L, et al. Mol Biol Rep, 2012 Aug. PMID 22714903
    2. Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana. Duchêne AM, et al. Proc Natl Acad Sci U S A, 2005 Nov 8. PMID 16251277, Free PMC Article
    3. Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis. Berg M, et al. Plant J, 2005 Dec. PMID 16297076
    4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337429.1
    NM_111134.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables tyrosine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tyrosyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
    NP_186915.1
    • EMBRYO DEFECTIVE 2768 (emb2768); FUNCTIONS IN: RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), RNA-binding S4 (InterPro:IPR002942), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 9022 Blast hits to 9013 proteins in 2715 species: Archae - 16; Bacteria - 5542; Metazoa - 116; Fungi - 145; Plants - 38; Viruses - 0; Other Eukaryotes - 3165 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      570134..572386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111134.5 → NP_186915.1  Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186915.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M876
      UniProtKB/TrEMBL
      A0A178VAQ8, A0A5S9X8K8, A0A7G2EHU6
      Conserved Domains (1) summary
      PRK05912
      Location:84 → 510
      PRK05912; tyrosyl-tRNA synthetase; Validated

    2. NM_001337429.1 → NP_001325501.1  Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M876
      UniProtKB/TrEMBL
      A0A178VAQ8, A0A5S9X8K8, A0A7G2EHU6
      Conserved Domains (1) summary
      PRK05912
      Location:84 → 510
      PRK05912; tyrosyl-tRNA synthetase; Validated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M876.1

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