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    RCK DNA helicase ROCK-N-ROLLERS [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822395, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RCK
    Official Full Name
    DNA helicase ROCK-N-ROLLERS
    Primary source
    TAIR:AT3G27730
    Locus tag
    AT3G27730
    See related
    Araport:AT3G27730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MER3; ROCK-N-ROLLERS
    Summary
    DNA helicase required for interference-sensitive meiotic crossover events.
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    Genomic context

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    See RCK in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    29
    Sequence:
    Chromosome: 3; NC_003074.8 (10273098..10280646, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene photosystem II light harvesting complex protein 2.3 Neighboring gene zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein Neighboring gene RING/U-box superfamily protein Neighboring gene IBR domain containing protein Neighboring gene carbamoyl phosphate synthetase A Neighboring gene ncRNA Neighboring gene PPR containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two meiotic crossover classes cohabit in Arabidopsis: one is dependent on MER3,whereas the other one is not. Mercier R, et al. Curr Biol, 2005 Apr 26. PMID 15854901
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Mutation in MER3 in Arabidopsis appears to be specific to recombination events resulting in interference-sensitive crossovers.
      Title: Two meiotic crossover classes cohabit in Arabidopsis: one is dependent on MER3,whereas the other one is not.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001338910.1
    NM_113689.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA helicase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chiasma assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within reciprocal meiotic recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA helicase ROCK-N-ROLLERS
    NP_189410.2
    • ROCK-N-ROLLERS (RCK); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT5G61140.2); Has 10425 Blast hits to 9108 proteins in 1594 species: Archae - 861; Bacteria - 4193; Metazoa - 1363; Fungi - 1417; Plants - 555; Viruses - 24; Other Eukaryotes - 2012 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10273098..10280646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338907.1 → NP_001326064.1  DNA helicase ROCK-N-ROLLERS [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LN50, A0A654FBJ4

    2. NM_001338906.1 → NP_001326062.1  DNA helicase ROCK-N-ROLLERS [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LN50, A0A654FBJ4

    3. NM_001338905.1 → NP_001326065.1  DNA helicase ROCK-N-ROLLERS [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LN50, A0A654FBJ4

    4. NM_001338908.1 → NP_001326061.1  DNA helicase ROCK-N-ROLLERS [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LN50, A0A654FBJ4

    5. NM_001338909.1 → NP_001326060.1  DNA helicase ROCK-N-ROLLERS [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LN52, Q5D892, Q9LVW8
      UniProtKB/TrEMBL
      A0A178VBC0
      Conserved Domains (2) summary
      COG1204
      Location:25 → 799
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      cd18023
      Location:24 → 237
      DEXHc_HFM1; DEXH-box helicase domain of ATP-dependent DNA helicase HFM1

    6. NM_113689.2 → NP_189410.2  DNA helicase ROCK-N-ROLLERS [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189410.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LN52, Q5D892, Q9LVW8
      UniProtKB/TrEMBL
      A0A178VBC0
      Conserved Domains (2) summary
      COG1204
      Location:25 → 799
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      cd18023
      Location:24 → 237
      DEXHc_HFM1; DEXH-box helicase domain of ATP-dependent DNA helicase HFM1

    7. NM_001338910.1 → NP_001326063.1  DNA helicase ROCK-N-ROLLERS [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LN52, Q5D892, Q9LVW8
      UniProtKB/TrEMBL
      A0A178VBC0
      Conserved Domains (2) summary
      COG1204
      Location:25 → 799
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      cd18023
      Location:24 → 237
      DEXHc_HFM1; DEXH-box helicase domain of ATP-dependent DNA helicase HFM1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5D892.1

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