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    ECT5 evolutionarily conserved C-terminal region 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820492, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECT5
    Official Full Name
    evolutionarily conserved C-terminal region 5
    Primary source
    TAIR:AT3G13060
    Locus tag
    AT3G13060
    See related
    Araport:AT3G13060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    evolutionarily conserved C-terminal region 5; MGH6.21
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    Genomic context

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    See ECT5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (4180154..4183975)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene STRUBBELIG-receptor family 4 Neighboring gene CBS domain-containing protein / transporter associated domain-containing protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant YTHDF proteins are direct effectors of antiviral immunity against an N6-methyladenosine-containing RNA virus. Martínez-Pérez M, et al. EMBO J, 2023 Sep 18. PMID 37431920, Free PMC Article
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338028.1
    NM_001338029.1
    NM_112143.4
    NM_180241.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to virus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    evolutionarily conserved C-terminal region 5
    NP_187912.2
    • evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1288 Blast hits to 1234 proteins in 189 species: Archae - 0; Bacteria - 12; Metazoa - 605; Fungi - 140; Plants - 385; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    NP_850572.1
    • evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.2); Has 1274 Blast hits to 1220 proteins in 186 species: Archae - 0; Bacteria - 12; Metazoa - 603; Fungi - 138; Plants - 381; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4180154..4183975
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338026.1 → NP_001327857.1  evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTL9, Q9LDZ8

    2. NM_001338027.1 → NP_001327858.1  evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTL7, Q9LDZ8

    3. NM_112143.4 → NP_187912.2  evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187912.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCB0, A0A384LL64, Q0WR25
      Conserved Domains (1) summary
      pfam04146
      Location:398 → 536
      YTH; YT521-B-like domain

    4. NM_180241.2 → NP_850572.1  evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850572.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JB30
      Conserved Domains (1) summary
      pfam04146
      Location:398 → 526
      YTH; YT521-B-like domain

    5. NM_001338028.1 → NP_001327859.1  evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTL8

    6. NM_001338029.1 → NP_001327860.1  evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTL9, Q9LDZ8
    Nucleotide Protein
    Heading Accession and Version

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