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    DNA glycosylase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844424, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA glycosylase superfamily protein
    Primary source
    TAIR:AT1G80850
    Locus tag
    AT1G80850
    See related
    Araport:AT1G80850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23A5.20; F23A5_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (30385449..30387602, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene cinnamoyl coa reductase Neighboring gene natural resistance-associated macrophage protein 1 Neighboring gene WRKY DNA-binding protein 40 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene phospholipid N-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106733.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-3-methyladenine glycosylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA glycosylase superfamily protein
    NP_178200.1
    • DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G15970.1); Has 3667 Blast hits to 3667 proteins in 1573 species: Archae - 10; Bacteria - 3168; Metazoa - 4; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30385449..30387602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106733.3 → NP_178200.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178200.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EQU3, Q9SAH6
      Conserved Domains (1) summary
      pfam03352
      Location:138 → 316
      Adenine_glyco; Methyladenine glycosylase
    Nucleotide Protein
    Heading Accession and Version

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