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    ERD4 Early-responsive to dehydration stress protein (ERD4) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839916, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ERD4
    Official Full Name
    Early-responsive to dehydration stress protein (ERD4)
    Primary source
    TAIR:AT1G30360
    Locus tag
    AT1G30360
    See related
    Araport:AT1G30360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    early-responsive to dehydration 4; T4K22.4; T4K22_4
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    Genomic context

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    See ERD4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (10715482..10718997)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Pectin lyase-like superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene photosystem I subunit K

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RIN4 functions with plasma membrane H+-ATPases to regulate stomatal apertures during pathogen attack. Liu J, et al. PLoS Biol, 2009 Jun 30. PMID 19564897, Free PMC Article
    2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102773.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Early-responsive to dehydration stress protein (ERD4)
    NP_564354.1
    • early-responsive to dehydration 4 (ERD4); INVOLVED IN: response to water deprivation; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G02900.1); Has 1361 Blast hits to 1266 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 651; Plants - 396; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10715482..10718997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102773.3 → NP_564354.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564354.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A097NUQ9, Q56WQ8, Q94B69, Q94II2, Q9C8G5
      UniProtKB/TrEMBL
      A0A178WAD7, A0A5S9WDR0, A0A654EE31
      Conserved Domains (2) summary
      COG5594
      Location:6 → 682
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:362 → 634
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8G5.1

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