scpl16 serine carboxypeptidase-like 16 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: scpl16
Official Full Name: serine carboxypeptidase-like 16
Primary source: TAIR:AT3G12220
Locus tag: AT3G12220
See related: Araport:AT3G12220
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: serine carboxypeptidase-like 16
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Genomic context

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See scpl16 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 14

Sequence:: Chromosome: 3; NC_003074.8 (3896207..3899019, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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NM_001337982.1

Supported by ESTs:

NM_001337983.1

Supported by ESTs:

NM_112058.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables serine-type carboxypeptidase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in proteolysis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: serine carboxypeptidase-like 16

NP_566414.3

serine carboxypeptidase-like 16 (scpl16); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 14 (TAIR:AT3G12230.1); Has 3960 Blast hits to 3875 proteins in 462 species: Archae - 0; Bacteria - 498; Metazoa - 629; Fungi - 839; Plants - 1565; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

3896207..3899019 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_112058.4 → NP_566414.3 serine carboxypeptidase-like 16 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566414.3

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9C7D4, Q9LHI4

UniProtKB/TrEMBL

A0A5S9XBM1, A0A654F7P3

Conserved Domains (1) summary

cl08270
Location:18 → 435

Peptidase_S10; Serine carboxypeptidase
NM_001337982.1 → NP_001327319.1 serine carboxypeptidase-like 16 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LRY3, A0A5S9XBM1, A0A654F7P3
NM_001337983.1 → NP_001327318.1 serine carboxypeptidase-like 16 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LRY2, A0A5S9XBM1, A0A654F7P3