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    ARF13 AUXIN RESPONSE FACTOR 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840316, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARF13
    Official Full Name
    AUXIN RESPONSE FACTOR 13
    Primary source
    TAIR:AT1G34170
    Locus tag
    AT1G34170
    See related
    Araport:AT1G34170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AUXIN RESPONSE FACTOR 13; F12G12.1; F12G12_1
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    Genomic context

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    See ARF13 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (12443547..12446764, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pseudouridine synthase family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene NAC domain containing protein 16 Neighboring gene NAC domain containing protein 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Vernoux T, et al. Mol Syst Biol, 2011 Jul 5. PMID 21734647, Free PMC Article
    2. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AUXIN RESPONSE FACTOR 13
    NP_001031139.1
    • AUXIN RESPONSE FACTOR 13 (ARF13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 14 (TAIR:AT1G35540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001154393.1
    • AUXIN RESPONSE FACTOR 13 (ARF13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin response factor 14 (TAIR:AT1G35540.1); Has 2357 Blast hits to 1909 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2357; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_174679.3
    • AUXIN RESPONSE FACTOR 13 (ARF13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 14 (TAIR:AT1G35540.1); Has 1152 Blast hits to 1137 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12443547..12446764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036062.1 → NP_001031139.1  AUXIN RESPONSE FACTOR 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031139.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FX25
      Conserved Domains (2) summary
      smart01019
      Location:124 → 227
      B3; B3 DNA binding domain
      pfam06507
      Location:252 → 305
      Auxin_resp; Auxin response factor

    2. NM_103140.3 → NP_174679.3  AUXIN RESPONSE FACTOR 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174679.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FX25
      Conserved Domains (2) summary
      smart01019
      Location:124 → 227
      B3; B3 DNA binding domain
      pfam06507
      Location:252 → 331
      Auxin_resp; Auxin response factor

    3. NM_001160921.1 → NP_001154393.1  AUXIN RESPONSE FACTOR 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154393.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WIN4, F4HT52
      Conserved Domains (3) summary
      smart01019
      Location:124 → 227
      B3; B3 DNA binding domain
      pfam02309
      Location:437 → 511
      AUX_IAA; AUX/IAA family
      pfam06507
      Location:252 → 305
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version

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