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    ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827965, updated on 18-Sep-2024

    Summary

    Official Symbol
    ATMYC1
    Official Full Name
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Primary source
    TAIR:AT4G00480
    Locus tag
    AT4G00480
    See related
    Araport:AT4G00480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N23.22; F6N23_22; myc1
    Summary
    MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
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    Genomic context

    See ATMYC1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (216812..219926, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNA polymerase II transcription mediator Neighboring gene RHO guanyl-nucleotide exchange factor 3 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene beta-amylase 2 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Acyl-CoA thioesterase family protein Neighboring gene ncRNA

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_001340255.1
    NM_116272.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity PubMed 
    enables protein binding PubMed 
    enables protein dimerization activity  
    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  
    located_in root hair PubMed 

    General protein information

    Preferred Names
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    NP_001154194.1
    • ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1481 Blast hits to 1090 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1462; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    NP_191957.2
    • ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1473 Blast hits to 1082 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      216812..219926 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160722.2 → NP_001154194.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154194.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FKM9, F4JHC4, F8UGN9, F8UGP2, F8UGQ1
      Conserved Domains (2) summary
      smart00353
      Location:346 → 388
      HLH; helix loop helix domain
      pfam14215
      Location:23 → 216
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    2. NM_116272.4 → NP_191957.2  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191957.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65257, P93651, Q8W2F1
      UniProtKB/TrEMBL
      A0A654FKM9, C0SVG1, F8UGN9, F8UGP2, F8UGQ1
      Conserved Domains (2) summary
      smart00353
      Location:346 → 388
      HLH; helix loop helix domain
      pfam14215
      Location:23 → 216
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    3. NM_001340255.1 → NP_001329692.1  basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8H4, A0A654FKM9, F8UGN9, F8UGP2, F8UGQ1
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