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    methyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828223, updated on 18-Sep-2024

    Summary

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    Official Full Name
    methyltransferase
    Primary source
    TAIR:AT4G01880
    Locus tag
    AT4G01880
    See related
    Araport:AT4G01880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7B11.14; T7B11_14
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (810657..812930, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Phe Neighboring gene tolB protein-like protein Neighboring gene Polyketide cyclase / dehydrase and lipid transport protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340341.1
    NM_001340342.1
    NM_116418.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    methyltransferase
    NP_192097.2
    • methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: tRNA processing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type, TRM13 (InterPro:IPR021721), Methyltransferase TRM13 (InterPro:IPR007871); Has 320 Blast hits to 305 proteins in 140 species: Archae - 2; Bacteria - 9; Metazoa - 124; Fungi - 54; Plants - 43; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      810657..812930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116418.3 → NP_192097.2  methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192097.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT67, A0A5S9XP33, F4JG68
      Conserved Domains (3) summary
      pfam05206
      Location:166 → 445
      TRM13; Methyltransferase TRM13
      pfam05253
      Location:43 → 66
      zf-U11-48K; U11-48K-like CHHC zinc finger
      pfam11722
      Location:7 → 34
      zf-TRM13_CCCH; CCCH zinc finger in TRM13 protein

    2. NM_001340341.1 → NP_001328565.1  methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B515, Q9SYI6

    3. NM_001340342.1 → NP_001328566.1  methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT67, A0A1P8B521, A0A5S9XP33, A0A7G2EZC2
    Nucleotide Protein
    Heading Accession and Version

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