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    RIC10 ROP-interactive CRIB motif-containing protein 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825829, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RIC10
    Official Full Name
    ROP-interactive CRIB motif-containing protein 10
    Primary source
    TAIR:AT4G04900
    Locus tag
    AT4G04900
    See related
    Araport:AT4G04900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ROP-interactive CRIB motif-containing protein 10; T1J1.7; T1J1_7
    Summary
    encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.
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    Genomic context

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    See RIC10 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (2485994..2488611, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene PCF11P-similar protein 4 Neighboring gene protodermal factor 2 Neighboring gene AAA-type ATPase family protein Neighboring gene sensitive to freezing 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide analysis of Arabidopsis Rop-interactive CRIB motif-containing proteins that act as Rop GTPase targets. Wu G, et al. Plant Cell, 2001 Dec. PMID 11752391, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ROP-interactive CRIB motif-containing protein 10
    NP_001319870.1
    • ROP-interactive CRIB motif-containing protein 10 (RIC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: cytoplasm; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: PAK-box/P21-Rho-binding family protein (TAIR:AT4G21745.1); Has 685 Blast hits to 255 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 27; Plants - 173; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2485994..2488611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340518.1 → NP_001319870.1  ROP-interactive CRIB motif-containing protein 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M0Y9
      UniProtKB/TrEMBL
      A0A178V3X3, A0A5S9XPW2
      Conserved Domains (1) summary
      cd00132
      Location:28 → 59
      CRIB; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...

    2. NM_116728.2 → NP_192399.1  ROP-interactive CRIB motif-containing protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192399.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M0Y9
      UniProtKB/TrEMBL
      A0A178V3X3, A0A5S9XPW2
      Conserved Domains (1) summary
      cd00132
      Location:28 → 59
      CRIB; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M0Y9.1

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