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    SNARE associated Golgi protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826542, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNARE associated Golgi protein family
    Primary source
    TAIR:AT4G09580
    Locus tag
    AT4G09580
    See related
    Araport:AT4G09580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25P22.20; T25P22_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (6052352..6054454, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Protease-associated (PA) RING/U-box zinc finger family protein Neighboring gene pseudo Neighboring gene calcium-dependent protein kinase 4 Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117026.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    SNARE associated Golgi protein family
    NP_192696.3
    • SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G71940.1); Has 2802 Blast hits to 2802 proteins in 773 species: Archae - 6; Bacteria - 1625; Metazoa - 227; Fungi - 38; Plants - 230; Viruses - 0; Other Eukaryotes - 676 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6052352..6054454 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117026.5 → NP_192696.3  SNARE associated Golgi protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192696.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L586, Q9SST4
      UniProtKB/TrEMBL
      A0A178V5D8, A0A5S9XR18, A0A654FMM3
      Conserved Domains (1) summary
      cl00429
      Location:104 → 284
      SNARE_assoc; SNARE associated Golgi protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L586.1

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