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    RNA ligase/cyclic nucleotide phosphodiesterase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827628, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA ligase/cyclic nucleotide phosphodiesterase family protein
    Primary source
    TAIR:AT4G18930
    Locus tag
    AT4G18930
    See related
    Araport:AT4G18930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13C5.100; F13C5_100
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (10370433..10372045)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NOD26-like intrinsic protein 1;2 Neighboring gene histone acetyltransferase (DUF1264) Neighboring gene RNA ligase/cyclic nucleotide phosphodiesterase family protein Neighboring gene Integrin-linked protein kinase family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of the Arabidopsis cyclic phosphodiesterase which hydrolyzes ADP-ribose 1'',2''-cyclic phosphate and nucleoside 2',3'-cyclic phosphates. Genschik P, et al. J Biol Chem, 1997 May 16. PMID 9148938
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_118010.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cyclic-nucleotide phosphodiesterase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cyclic-nucleotide phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within tRNA splicing, via endonucleolytic cleavage and ligation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    RNA ligase/cyclic nucleotide phosphodiesterase family protein
    NP_193628.1
    • RNA ligase/cyclic nucleotide phosphodiesterase family protein; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), 2',3'-cyclic-nucleotide 3'-phosphodiesterase (InterPro:IPR012386); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT4G18940.1); Has 112 Blast hits to 112 proteins in 29 species: Archae - 3; Bacteria - 12; Metazoa - 0; Fungi - 8; Plants - 58; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10370433..10372045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118010.5 → NP_193628.1  RNA ligase/cyclic nucleotide phosphodiesterase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193628.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04147
      UniProtKB/TrEMBL
      A0A178UV99, A0A5S9XU28
      Conserved Domains (1) summary
      pfam07823
      Location:10 → 179
      CPDase; Cyclic phosphodiesterase-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04147.1

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