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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828787, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT4G26800
    Locus tag
    AT4G26800
    See related
    Araport:AT4G26800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M23.140; F10M23_140
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (13489806..13492085)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Phosphatidate cytidylyltransferase family protein Neighboring gene Co-chaperone GrpE family protein Neighboring gene ncRNA Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene SWIB/MDM2 domain superfamily protein Neighboring gene GrpE-like protein Neighboring gene O-Glycosyl hydrolases family 17 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001341831.1
    NM_118814.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_194410.2
    • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62680.1); Has 55507 Blast hits to 13757 proteins in 291 species: Archae - 5; Bacteria - 42; Metazoa - 586; Fungi - 574; Plants - 52777; Viruses - 0; Other Eukaryotes - 1523 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13489806..13492085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341830.1 → NP_001329166.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZ20
      UniProtKB/TrEMBL
      A0A5S9XWK2
      Conserved Domains (3) summary
      PLN03077
      Location:116 → 492
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:230 → 257
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:83 → 135
      PPR_2; PPR repeat family

    2. NM_118814.3 → NP_194410.2  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194410.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZ20
      Conserved Domains (5) summary
      TIGR00756
      Location:294 → 327
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:85 → 112
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:77 → 109
      PPR_1; PPR repeat
      pfam13041
      Location:151 → 200
      PPR_2; PPR repeat family
      cl03252
      Location:42 → 75
      PPR; PPR repeat

    3. NM_001341831.1 → NP_001329165.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6V5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZ20.2

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