S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Primary source: TAIR:AT4G28830
Locus tag: AT4G28830
See related: Araport:AT4G28830
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F16A16.60; F16A16_60
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 10

Sequence:: Chromosome: 4; NC_003075.7 (14232422..14234334)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Methyltransferase ATMETTL5 writes m[6]A on 18S ribosomal RNA to regulate translation in Arabidopsis.
Title: Methyltransferase ATMETTL5 writes m(6)A on 18S ribosomal RNA to regulate translation in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001084995.2

Supported by ESTs:

NM_001341948.1

Supported by ESTs:

NM_119027.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

NP_001078464.1

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 3586 Blast hits to 3586 proteins in 1312 species: Archae - 213; Bacteria - 2970; Metazoa - 118; Fungi - 5; Plants - 52; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).

NP_194612.2

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 3625 Blast hits to 3623 proteins in 1319 species: Archae - 217; Bacteria - 2993; Metazoa - 122; Fungi - 3; Plants - 52; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

14232422..14234334

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001341947.1 → NP_001328316.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V2A7, A0A654FTS8, A0A7G2F6Z0, Q84TF1

Conserved Domains (1) summary

COG2263
Location:4 → 204

COG2263; Predicted RNA methylase [General function prediction only]
NM_119027.4 → NP_194612.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194612.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V2A7, A0A654FTS8, A0A7G2F6Z0, Q84TF1

Conserved Domains (1) summary

COG2263
Location:4 → 204

COG2263; Predicted RNA methylase [General function prediction only]
NM_001341948.1 → NP_001328315.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V2A7, A0A654FTS8, A0A7G2F6Z0, Q84TF1

Conserved Domains (1) summary

COG2263
Location:4 → 204

COG2263; Predicted RNA methylase [General function prediction only]
NM_001084995.2 → NP_001078464.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078464.1

Status: REVIEWED

UniProtKB/TrEMBL

A8MR57

Conserved Domains (1) summary

cl17173
Location:4 → 157

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...