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    DER1 DERLIN-1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829054, updated on 18-Sep-2024

    Summary

    Official Symbol
    DER1
    Official Full Name
    DERLIN-1
    Primary source
    TAIR:AT4G29330
    Locus tag
    AT4G29330
    See related
    Araport:AT4G29330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DERLIN-1; F17A13.150; F17A13_150
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    Genomic context

    See DER1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (14444553..14447237)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene low-molecular-weight cysteine-rich 25 Neighboring gene DUF1005 family protein (DUF1005) Neighboring gene profilin 4 Neighboring gene profilin 2 Neighboring gene O-Glycosyl hydrolases family 17 protein

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    DERLIN-1
    NP_194662.2
    • DERLIN-1 (DER1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 918 Blast hits to 916 proteins in 241 species: Archae - 0; Bacteria - 22; Metazoa - 340; Fungi - 200; Plants - 147; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14444553..14447237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119078.5NP_194662.2  DERLIN-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194662.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZU9, Q9M0E8
      UniProtKB/TrEMBL
      A0A178URI3, A0A5S9XWZ5, A0A654FUD1
      Conserved Domains (1) summary
      cl21536
      Location:11201
      Rhomboid; Rhomboid family
    2. NM_001341965.1NP_001328427.1  DERLIN-1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4M3
      Conserved Domains (1) summary
      cl21536
      Location:11201
      Rhomboid; Rhomboid family