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    C3H4 type zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829395, updated on 18-Sep-2024

    Summary

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    Official Full Name
    C3H4 type zinc finger protein
    Primary source
    TAIR:AT4G32600
    Locus tag
    AT4G32600
    See related
    Araport:AT4G32600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4D11.200; F4D11_200
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (15723345..15726141)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Thioredoxin superfamily protein Neighboring gene 2Fe-2S ferredoxin-like superfamily protein Neighboring gene Mitochondrial glycoprotein family protein Neighboring gene copper ion binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342161.1
    NM_119412.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    C3H4 type zinc finger protein
    NP_194986.2
    • zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G80400.1); Has 7180 Blast hits to 7160 proteins in 223 species: Archae - 0; Bacteria - 6; Metazoa - 2398; Fungi - 545; Plants - 2870; Viruses - 33; Other Eukaryotes - 1328 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15723345..15726141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119412.6 → NP_194986.2  C3H4 type zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194986.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US65, A0A384LGZ8, A0A5S9XYF3, Q8VY23
      Conserved Domains (1) summary
      cd16474
      Location:362 → 404
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

    2. NM_001342161.1 → NP_001329839.1  C3H4 type zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US65, A0A384LGZ8, A0A5S9XYF3, Q8VY23
      Conserved Domains (1) summary
      cd16474
      Location:362 → 404
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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