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    carbohydrate esterase, putative (DUF303) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829570, updated on 18-Sep-2024

    Summary

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    Official Full Name
    carbohydrate esterase, putative (DUF303)
    Primary source
    TAIR:AT4G34215
    Locus tag
    AT4G34215
    See related
    Araport:AT4G34215
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (16379603..16381449, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene stress enhanced protein 1 Neighboring gene D-3-phosphoglycerate dehydrogenase Neighboring gene SKP1-like 11 Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The structure at 1.6 Angstroms resolution of the protein product of the At4g34215 gene from Arabidopsis thaliana. Bitto E, et al. Acta Crystallogr D Biol Crystallogr, 2005 Dec. PMID 16301800
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_119585.2
    NM_179162.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carbohydrate esterase, putative (DUF303)
    NP_567960.1
    • Domain of unknown function (DUF303); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF303) (TAIR:AT3G53010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849493.1
    • Domain of unknown function (DUF303); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF303) (TAIR:AT3G53010.1); Has 345 Blast hits to 345 proteins in 104 species: Archae - 2; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16379603..16381449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179162.4 → NP_849493.1  carbohydrate esterase, putative (DUF303) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849493.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49483, Q8L9J9
      UniProtKB/TrEMBL
      A0A178UUK7, A0A5S9XYH9, A0A654FVC6
      Conserved Domains (1) summary
      pfam03629
      Location:21 → 257
      SASA; Carbohydrate esterase, sialic acid-specific acetylesterase

    2. NM_119585.2 → NP_567960.1  carbohydrate esterase, putative (DUF303) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567960.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49483, Q8L9J9
      UniProtKB/TrEMBL
      A0A178UUK7, A0A5S9XYH9, A0A654FVC6
      Conserved Domains (1) summary
      pfam03629
      Location:21 → 257
      SASA; Carbohydrate esterase, sialic acid-specific acetylesterase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L9J9.2

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