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    NmrA-like negative transcriptional regulator family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829605, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NmrA-like negative transcriptional regulator family protein
    Primary source
    TAIR:AT4G34540
    Locus tag
    AT4G34540
    See related
    Araport:AT4G34540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4L20.120; T4L20_120
    Summary
    encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (16498391..16502174)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-CoA synthase 17 Neighboring gene 3-ketoacyl-CoA synthase 18 Neighboring gene cryptochrome-interacting basic-helix-loop-helix 1 Neighboring gene F-box protein Neighboring gene Ribosomal protein S25 family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Natural allelic variation of GVS1 confers diversity in the regulation of leaf senescence in Arabidopsis. Lyu JI, et al. New Phytol, 2019 Mar. PMID 30266040
    2. Evolution of plant defense mechanisms. Relationships of phenylcoumaran benzylic ether reductases to pinoresinol-lariciresinol and isoflavone reductases. Gang DR, et al. J Biol Chem, 1999 Mar 12. PMID 10066819
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_119619.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables pinoresinol reductase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to hydroperoxide IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NmrA-like negative transcriptional regulator family protein
    NP_195180.1
    • NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: pinoresinol reductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 2050 Blast hits to 2046 proteins in 499 species: Archae - 10; Bacteria - 767; Metazoa - 6; Fungi - 470; Plants - 578; Viruses - 7; Other Eukaryotes - 212 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16498391..16502174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119619.2 → NP_195180.1  NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195180.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65679
      UniProtKB/TrEMBL
      A0A5S9XYL9
      Conserved Domains (2) summary
      pfam01370
      Location:10 → 207
      Epimerase; NAD dependent epimerase/dehydratase family
      pfam05368
      Location:10 → 235
      NmrA; NmrA-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65679.2

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