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    PRP4 proline-rich protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830032, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PRP4
    Official Full Name
    proline-rich protein 4
    Primary source
    TAIR:AT4G38770
    Locus tag
    AT4G38770
    See related
    Araport:AT4G38770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4; ATPRP4; proline-rich protein 4; T9A14.50; T9A14_50
    Summary
    Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.
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    Genomic context

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    See PRP4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (18096606..18098633, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene nucleoporin (DUF3414) Neighboring gene rotamase CYP 1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene pre-mRNA-processing-splicing factor-like protein Neighboring gene uncharacterized protein Neighboring gene ER lumen protein retaining receptor family protein Neighboring gene methylthioadenosine nucleosidase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and expression of four proline-rich cell wall protein genes in Arabidopsis encoding two distinct subsets of multiple domain proteins. Fowler TJ, et al. Plant Physiol, 1999 Dec. PMID 10594096, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120037.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type cell wall ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proline-rich protein 4
    NP_195588.1
    • proline-rich protein 4 (PRP4); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 2 (TAIR:AT2G21140.1); Has 142477 Blast hits to 44863 proteins in 2266 species: Archae - 463; Bacteria - 33947; Metazoa - 50713; Fungi - 14839; Plants - 19672; Viruses - 4087; Other Eukaryotes - 18756 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18096606..18098633 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120037.4 → NP_195588.1  proline-rich protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195588.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHX5, Q9M6T6, Q9M7N8, Q9T0I5
      UniProtKB/TrEMBL
      A0A5S9Y0H3, A0A654FX17
      Conserved Domains (1) summary
      pfam01190
      Location:41 → 110
      Pollen_Ole_e_I; Pollen proteins Ole e I like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T0I5.1

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