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    TIP41-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824567, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TIP41-like protein
    Primary source
    TAIR:AT3G54000
    Locus tag
    AT3G54000
    See related
    Araport:AT3G54000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19996177..19998736)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene FKBP-type peptidyl-prolyl cis-trans isomerase family protein Neighboring gene Inositol phosphorylceramide synthase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001339647.1
    NM_115260.3
    NM_202699.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TIP41-like protein
    NP_001319743.1
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566992.1
    • CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974428.1
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19996177..19998736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202699.2 → NP_974428.1  TIP41-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974428.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JBQ4, Q8LGI5

    2. NM_115260.3 → NP_566992.1  TIP41-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566992.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FH20, Q84JE0, Q8LGI5

    3. NM_001339647.1 → NP_001319743.1  TIP41-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JBQ5, Q8LGI5
    Nucleotide Protein
    Heading Accession and Version

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