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    Ribosomal L29 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824683, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal L29 family protein
    Primary source
    TAIR:AT3G55170
    Locus tag
    AT3G55170
    See related
    Araport:AT3G55170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (20452910..20454530, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene exocyst subunit exo70 family protein H1 Neighboring gene ncRNA Neighboring gene thyroid adenoma-associated-like protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339724.1
    NM_001339725.1
    NM_001339726.1
    NM_115375.5
    NM_202711.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic large ribosomal subunit HDA PubMed 
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal L29 family protein
    NP_001319756.1
    • Ribosomal L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1); Has 1329 Blast hits to 1329 proteins in 532 species: Archae - 155; Bacteria - 387; Metazoa - 302; Fungi - 146; Plants - 143; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
    NP_974440.1
    • Ribosomal L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20452910..20454530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339724.1 → NP_001319756.1  Ribosomal L29 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT25, Q9M3D2
      UniProtKB/TrEMBL
      A0A654FFZ9
      Conserved Domains (1) summary
      pfam00831
      Location:8 → 60
      Ribosomal_L29; Ribosomal L29 protein

    2. NM_001339725.1 → NP_001327436.1  Ribosomal L29 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSB4, A0A7G2EH20
      Conserved Domains (1) summary
      pfam00831
      Location:8 → 60
      Ribosomal_L29; Ribosomal L29 protein

    3. NM_115375.5 → NP_191077.1  Ribosomal L29 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191077.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT25, Q9M3D2
      UniProtKB/TrEMBL
      A0A654FFZ9
      Conserved Domains (1) summary
      pfam00831
      Location:8 → 60
      Ribosomal_L29; Ribosomal L29 protein

    4. NM_001339726.1 → NP_001327437.1  Ribosomal L29 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSB4, A0A7G2EH20
      Conserved Domains (1) summary
      pfam00831
      Location:8 → 60
      Ribosomal_L29; Ribosomal L29 protein

    5. NM_202711.2 → NP_974440.1  Ribosomal L29 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974440.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT25, Q9M3D2
      UniProtKB/TrEMBL
      A0A654FFZ9
      Conserved Domains (1) summary
      pfam00831
      Location:8 → 60
      Ribosomal_L29; Ribosomal L29 protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M3D2.1

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