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    PDCB5 plasmodesmata callose-binding protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824979, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PDCB5
    Official Full Name
    plasmodesmata callose-binding protein 5
    Primary source
    TAIR:AT3G58100
    Locus tag
    AT3G58100
    See related
    Araport:AT3G58100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    plasmodesmata callose-binding protein 5
    Summary
    Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.
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    Genomic context

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    See PDCB5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (21515170..21517739, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene ncRNA Neighboring gene N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein Neighboring gene phenylalanyl-tRNA synthetase class IIc family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking. Simpson C, et al. Plant Cell, 2009 Feb. PMID 19223515, Free PMC Article
    2. Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. Elortza F, et al. Mol Cell Proteomics, 2003 Dec. PMID 14517339
    3. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    4. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115672.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables (1->3)-beta-D-glucan binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plasmodesmata callose-binding protein 5
    NP_567060.1
    • plasmodesmata callose-binding protein 5 (PDCB5); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT1G29380.1); Has 1455 Blast hits to 1408 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 65; Plants - 1390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21515170..21517739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339907.1 → NP_001327504.1  plasmodesmata callose-binding protein 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSI7, A0A5S9XLU9
      Conserved Domains (1) summary
      smart00768
      Location:116 → 201
      X8; Possibly involved in carbohydrate binding

    2. NM_115672.3 → NP_567060.1  plasmodesmata callose-binding protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567060.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1ECG5, Q8LDH7, Q9M2K6
      UniProtKB/TrEMBL
      A0A178V774
      Conserved Domains (1) summary
      smart00768
      Location:40 → 125
      X8; Possibly involved in carbohydrate binding
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2K6.2

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