zinc finger protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: zinc finger protein
Primary source: TAIR:AT5G03440
Locus tag: AT5G03440
See related: Araport:AT5G03440
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F12E4.200; F12E4_200
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 5

Sequence:: Chromosome: 5; NC_003076.8 (856815..858444, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

NM_001342705.1

Supported by ESTs:

NM_120423.2

Supported by ESTs:

NM_202997.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: zinc finger protein

NP_568118.1

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_974726.1

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

856815..858444 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_120423.2 → NP_568118.1 zinc finger protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568118.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UKJ3, A0A384KNI3, Q8LBJ0

Conserved Domains (1) summary

pfam13259
Location:7 → 98

DUF4050; Protein of unknown function (DUF4050)
NM_202997.2 → NP_974726.1 zinc finger protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974726.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UKJ3, A0A384KNI3, Q8LBJ0

Conserved Domains (1) summary

pfam13259
Location:7 → 98

DUF4050; Protein of unknown function (DUF4050)
NM_001342705.1 → NP_001330449.1 zinc finger protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UKJ3, A0A384KNI3, Q8LBJ0

Conserved Domains (1) summary

pfam13259
Location:7 → 98

DUF4050; Protein of unknown function (DUF4050)