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    cysteine-rich TM module stress tolerance protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830287, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cysteine-rich TM module stress tolerance protein
    Primary source
    TAIR:AT5G04080
    Locus tag
    AT5G04080
    See related
    Araport:AT5G04080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21E1.3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (1104524..1105398)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA-directed DNA polymerase (reverse transcriptase) Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene histidine-tRNA ligase Neighboring gene DNA GYRASE B3 Neighboring gene Phosphoglycerate mutase family protein Neighboring gene DNA GYRASE B2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CYSTM, a Novel Non-Secreted Cysteine-Rich Peptide Family, Involved in Environmental Stresses in Arabidopsis thaliana. Xu Y, et al. Plant Cell Physiol, 2018 Feb 1. PMID 29272523
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203292.1
    NM_001203293.1
    NM_120490.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-rich TM module stress tolerance protein
    NP_001190221.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages.
    NP_001190222.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages.
    NP_196028.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1104524..1105398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203293.1 → NP_001190222.1  cysteine-rich TM module stress tolerance protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190222.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KI52

    2. NM_001203292.1 → NP_001190221.1  cysteine-rich TM module stress tolerance protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190221.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN81

    3. NM_120490.4 → NP_196028.2  cysteine-rich TM module stress tolerance protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196028.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NN03, Q9LZA2
      UniProtKB/TrEMBL
      A0A178UQA4
      Conserved Domains (1) summary
      pfam12734
      Location:39 → 63
      CYSTM; Cysteine-rich TM module stress tolerance
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NN03.1

    Gene LinkOut

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