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    HCF136 photosystem II stability/assembly factor, chloroplast (HCF136) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832376, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HCF136
    Official Full Name
    photosystem II stability/assembly factor, chloroplast (HCF136)
    Primary source
    TAIR:AT5G23120
    Locus tag
    AT5G23120
    See related
    Araport:AT5G23120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    HIGH CHLOROPHYLL FLUORESCENCE 136; MYJ24.11; MYJ24_11
    Summary
    encodes a stability and/or assembly factor of photosystem II
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    Genomic context

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    See HCF136 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (7778017..7780907)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene uncharacterized protein Neighboring gene Peptidoglycan-binding LysM domain-containing protein Neighboring gene nuclear-encoded CLP protease P7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A nuclear-encoded protein of prokaryotic origin is essential for the stability of photosystem II in Arabidopsis thaliana. Meurer J, et al. EMBO J, 1998 Sep 15. PMID 9736608, Free PMC Article
    2. Phosphomimicking within the transit peptide of pHCF136 leads to reduced photosystem II accumulation in vivo. Nickel C, et al. FEBS Lett, 2015 May 22. PMID 25935521
    3. The HCF136 protein is essential for assembly of the photosystem II reaction center in Arabidopsis thaliana. Plücken H, et al. FEBS Lett, 2002 Dec 4. PMID 12459468
    4. Characterization of the Free and Membrane-Associated Fractions of the Thylakoid Lumen Proteome in Arabidopsis thaliana. Gollan PJ, et al. Int J Mol Sci, 2021 Jul 29. PMID 34360890, Free PMC Article
    5. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_122218.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plastid organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein-containing complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stromal thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid lumen HDA PubMed 
    located_in chloroplast thylakoid lumen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in plastid HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid lumen HDA PubMed 

    General protein information

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    Preferred Names
    photosystem II stability/assembly factor, chloroplast (HCF136)
    NP_197703.1
    • HIGH CHLOROPHYLL FLUORESCENCE 136 (HCF136); INVOLVED IN: response to cadmium ion, plastid organization, protein complex assembly; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BNR repeat (InterPro:IPR002860), Photosystem II stability/assembly factor, HCF136 (InterPro:IPR016705), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7778017..7780907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343790.1 → NP_001332175.1  photosystem II stability/assembly factor, chloroplast (HCF136) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UP93, A0A1P8BG37
      Conserved Domains (1) summary
      PLN00033
      Location:32 → 426
      PLN00033; photosystem II stability/assembly factor; Provisional

    2. NM_122218.3 → NP_197703.1  photosystem II stability/assembly factor, chloroplast (HCF136) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197703.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82660, Q56Z72
      UniProtKB/TrEMBL
      A0A178UP93, A0A654G449
      Conserved Domains (1) summary
      PLN00033
      Location:9 → 403
      PLN00033; photosystem II stability/assembly factor; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82660.1

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