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    CIP1 COP1-interactive protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834184, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CIP1
    Official Full Name
    COP1-interactive protein 1
    Primary source
    TAIR:AT5G41790
    Locus tag
    AT5G41790
    See related
    Araport:AT5G41790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COP1-interactive protein 1; K16L22.7; K16L22_7
    Summary
    encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.
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    Genomic context

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    See CIP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (16725753..16732847)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene crooked neck protein, putative / cell cycle protein Neighboring gene myosin heavy chain-like protein Neighboring gene ncRNA Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene Avr9/Cf-9 rapidly elicited protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CIP1, a CIPK23-interacting transporter, is implicated in Cd tolerance and phytoremediation. Wang J, et al. J Hazard Mater, 2024 Jun 5. PMID 38640682
    2. Arabidopsis COP1-interacting protein 1 is a positive regulator of ABA response. Ren C, et al. Biochem Biophys Res Commun, 2016 Sep 2. PMID 27372427
    3. Arabidopsis COP1 protein specifically interacts in vitro with a cytoskeleton-associated protein, CIP1. Matsui M, et al. Proc Natl Acad Sci U S A, 1995 May 9. PMID 7753789, Free PMC Article
    4. COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis. Devoto A, et al. Plant J, 2002 Nov. PMID 12445118
    5. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_123544.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to abscisic acid stimulus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of abscisic acid-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of protein import into nucleus TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    NOT involved_in response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to osmotic stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    COP1-interactive protein 1
    NP_198994.2
    • COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16725753..16732847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344421.1 → NP_001330520.1  COP1-interactive protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JZY1, Q38843, Q9FJ35
      UniProtKB/TrEMBL
      A0A178U9B6
      Conserved Domains (2) summary
      pfam07765
      Location:14 → 78
      KIP1; KIP1-like protein
      cl25732
      Location:656 → 1434
      SMC_N; RecF/RecN/SMC N terminal domain

    2. NM_123544.3 → NP_198994.2  COP1-interactive protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198994.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JZY1, Q38843, Q9FJ35
      UniProtKB/TrEMBL
      A0A178U9B6
      Conserved Domains (2) summary
      pfam07765
      Location:14 → 78
      KIP1; KIP1-like protein
      cl25732
      Location:656 → 1434
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JZY1.1

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