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    Protein with RNI-like/FBD-like domain [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834515, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Protein with RNI-like/FBD-like domain
    Primary source
    TAIR:AT5G44850
    Locus tag
    AT5G44850
    See related
    Araport:AT5G44850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K21C13.2; K21C13_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (18108304..18109593)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA Neighboring gene polyadenylate-binding protein 1-B-binding protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123853.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein with RNI-like/FBD-like domain
    NP_199298.1
    • Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G05080.1); Has 667 Blast hits to 642 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 97; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18108304..18109593
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123853.1 → NP_199298.1  Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199298.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGI2, O48575
      Conserved Domains (2) summary
      smart00579
      Location:259 → 331
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:88 → 110
      LRR_2; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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