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    protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834693, updated on 18-Sep-2024

    Summary

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    Official Full Name
    protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein
    Primary source
    TAIR:AT5G46500
    Locus tag
    AT5G46500
    See related
    Araport:AT5G46500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K11I1.9; K11I1_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (18855955..18858552)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene ncRNA Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and molecular properties of SUMO-binding proteins in Arabidopsis. Park HC, et al. Mol Cells, 2011 Aug. PMID 21607647, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344687.1
    NM_001344689.1
    NM_001344690.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein
    NP_001318749.1
    • BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18855955..18858552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344688.1 → NP_001330778.1  protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBU6

    2. NM_001344687.1 → NP_001318749.1  protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FHF5
      Conserved Domains (1) summary
      PLN03210
      Location:11 → 293
      PLN03210; Resistant to P. syringae 6; Provisional

    3. NM_001344689.1 → NP_001330777.1  protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FHF5
      Conserved Domains (1) summary
      PLN03210
      Location:11 → 293
      PLN03210; Resistant to P. syringae 6; Provisional

    4. NM_001344690.1 → NP_001330779.1  protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBU6
    Nucleotide Protein
    Heading Accession and Version

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