uncharacterized protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: uncharacterized protein
Primary source: TAIR:AT5G47830
Locus tag: AT5G47830
See related: Araport:AT5G47830
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: MCA23.17; MCA23_17
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 2

Sequence:: Chromosome: 5; NC_003076.8 (19372821..19374693, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_124157.3

Supported by ESTs:

NM_203173.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: uncharacterized protein

NP_199594.3

unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_974902.1

unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

19372821..19374693 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_124157.3 → NP_199594.3 uncharacterized protein AT5G47830 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UCE8, A0A5S9YCH5, F4JYP3

Conserved Domains (1) summary

cl38936
Location:38 → 133

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
NM_203173.2 → NP_974902.1 uncharacterized protein AT5G47830 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974902.1

Status: REVIEWED

UniProtKB/TrEMBL

Q3E8E9

Conserved Domains (1) summary

cl21455
Location:10 → 79

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases