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    complex 1 protein, LYR family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835271, updated on 18-Sep-2024

    Summary

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    Official Full Name
    complex 1 protein, LYR family protein
    Primary source
    TAIR:AT5G51960
    Locus tag
    AT5G51960
    See related
    Araport:AT5G51960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSG15.4; MSG15_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (21110333..21111424)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein Neighboring gene RNA polymerase Rpb6 Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene C-repeat-binding factor 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001344971.1
    NM_124575.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    complex 1 protein, LYR family protein
    NP_200009.1
    • CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21110333..21111424
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124575.7 → NP_200009.1  complex 1 protein, LYR family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200009.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULU0, A0A5S9YD65, A0A7G2FJG6, Q9FJ96
      Conserved Domains (2) summary
      cl40429
      Location:12 → 45
      Complex1_LYR_SF; LYR (leucine-tyrosine-arginine) motif found in Complex1_LYR-like superfamily
      pfam13233
      Location:10 → 96
      Complex1_LYR_2; Complex1_LYR-like

    2. NM_001344971.1 → NP_001331290.1  complex 1 protein, LYR family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULU0, A0A5S9YD65, A0A7G2FJG6, Q9FJ96
      Conserved Domains (2) summary
      cl40429
      Location:12 → 45
      Complex1_LYR_SF; LYR (leucine-tyrosine-arginine) motif found in Complex1_LYR-like superfamily
      pfam13233
      Location:10 → 96
      Complex1_LYR_2; Complex1_LYR-like
    Nucleotide Protein
    Heading Accession and Version

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