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    RANBP1 RAN binding protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835973, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RANBP1
    Official Full Name
    RAN binding protein 1
    Primary source
    TAIR:AT5G58590
    Locus tag
    AT5G58590
    See related
    Araport:AT5G58590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MZN1.4; MZN1_4; RAN binding protein 1
    Summary
    Encodes a Ran-binding protein 1 homolog (RanBP1).
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    Genomic context

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    See RANBP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (23680063..23681935, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene TOXICOS EN LEVADURA 63 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis. Haizel T, et al. Plant J, 1997 Jan. PMID 9025305
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125246.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein import into nucleus TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    RAN binding protein 1
    NP_200667.2
    • RAN binding protein 1 (RANBP1); FUNCTIONS IN: protein binding; INVOLVED IN: protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 1560 Blast hits to 1231 proteins in 240 species: Archae - 0; Bacteria - 8; Metazoa - 836; Fungi - 365; Plants - 158; Viruses - 15; Other Eukaryotes - 178 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23680063..23681935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125246.4 → NP_200667.2  RAN binding protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200667.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P92985, Q9LUZ8
      UniProtKB/TrEMBL
      A0A178UPR8, A0A384LJ84, Q1WWI2
      Conserved Domains (1) summary
      cd13179
      Location:24 → 157
      RanBD_RanBP1; Ran-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P92985.1

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