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    Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836756, updated on 18-Sep-2024

    Summary

    Official Full Name
    Transducin/WD40 repeat-like superfamily protein
    Primary source
    TAIR:AT5G66240
    Locus tag
    AT5G66240
    See related
    Araport:AT5G66240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K1L20.2; K1L20_2
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (26466172..26468484)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Chalcone-flavanone isomerase family protein Neighboring gene Chalcone-flavanone isomerase family protein Neighboring gene miscRNA Neighboring gene kinectin-like protein Neighboring gene SAUR-like auxin-responsive protein family

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001203704.1
    NM_126022.4
    NM_180950.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex PubMed 
    located_in cytoplasm PubMed 
    located_in cytoplasm  
    located_in nucleus PubMed 

    General protein information

    Preferred Names
    Transducin/WD40 repeat-like superfamily protein
    NP_001190633.1
    • Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1).
    NP_569031.1
    • Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851281.1
    • Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1); Has 21938 Blast hits to 12469 proteins in 522 species: Archae - 46; Bacteria - 4852; Metazoa - 7701; Fungi - 4572; Plants - 2085; Viruses - 0; Other Eukaryotes - 2682 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26466172..26468484
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203704.1NP_001190633.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190633.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FKD2, F4JZ57
      Conserved Domains (3) summary
      COG2319
      Location:8308
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:3370
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:24307
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. NM_126022.4NP_569031.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_569031.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LFX4, Q8RXD8
      Conserved Domains (2) summary
      sd00039
      Location:3673
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:27312
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. NM_180950.3NP_851281.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851281.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPK2, A0A7G2FKD2, Q9FH64
      Conserved Domains (2) summary
      sd00039
      Location:3370
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:24309
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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