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    Bromodomain transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831410, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Bromodomain transcription factor
    Primary source
    TAIR:AT5G15570
    Locus tag
    AT5G15570
    See related
    Araport:AT5G15570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20K14.180; T20K14_180
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (5066204..5068199)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene longifolia1 Neighboring gene uncharacterized protein Neighboring gene SPIRAL1-like4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121561.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Bromodomain transcription factor
    NP_197061.1
    • Bromodomain transcription factor; CONTAINS InterPro DOMAIN/s: Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT3G02160.1); Has 201 Blast hits to 201 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5066204..5068199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121561.3 → NP_197061.1  Bromodomain transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197061.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UC64, A0A5S9Y4D2, Q9LF25
      Conserved Domains (2) summary
      smart00576
      Location:25 → 116
      BTP; Bromodomain transcription factors and PHD domain containing proteins
      cl11065
      Location:176 → 221
      TAF8; TATA Binding Protein (TBP) Associated Factor 8
    Nucleotide Protein
    Heading Accession and Version

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